Results for 'Barry Alan David'

961 found
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  1. Integration of Intelligence Data through Semantic Enhancement.David Salmen, Tatiana Malyuta, Alan Hansen, Shaun Cronen & Barry Smith - 2011 - In David Salmen, Tatiana Malyuta, Alan Hansen, Shaun Cronen & Barry Smith, Integration of Intelligence Data through Semantic Enhancement. CEUR, Vol. 808.
    We describe a strategy for integration of data that is based on the idea of semantic enhancement. The strategy promises a number of benefits: it can be applied incrementally; it creates minimal barriers to the incorporation of new data into the semantically enhanced system; it preserves the existing data (including any existing data-semantics) in their original form (thus all provenance information is retained, and no heavy preprocessing is required); and it embraces the full spectrum of data sources, types, models, and (...)
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  2. OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies.Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D. Diehl, Damion Dooley, William Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert, Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall & Bjoern Peters - 2021 - BioaRxiv.
    Biological ontologies are used to organize, curate, and interpret the vast quantities of data arising from biological experiments. While this works well when using a single ontology, integrating multiple ontologies can be problematic, as they are developed independently, which can lead to incompatibilities. The Open Biological and Biomedical Ontologies Foundry was created to address this by facilitating the development, harmonization, application, and sharing of ontologies, guided by a set of overarching principles. One challenge in reaching these goals was that the (...)
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  3. Towards a Body Fluids Ontology: A unified application ontology for basic and translational science.Jiye Ai, Mauricio Barcellos Almeida, André Queiroz De Andrade, Alan Ruttenberg, David Tai Wai Wong & Barry Smith - 2011 - Second International Conference on Biomedical Ontology , Buffalo, Ny 833:227-229.
    We describe the rationale for an application ontology covering the domain of human body fluids that is designed to facilitate representation, reuse, sharing and integration of diagnostic, physiological, and biochemical data, We briefly review the Blood Ontology (BLO), Saliva Ontology (SALO) and Kidney and Urinary Pathway Ontology (KUPO) initiatives. We discuss the methods employed in each, and address the project of using them as starting point for a unified body fluids ontology resource. We conclude with a description of how the (...)
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  4. Introduction.Christian Barry & Holly Lawford-Smith - 2012 - In Christian Barry & Holly Lawford-Smith, Global Justice. Ashgate.
    This volume brings together a range of influential essays by distinguished philosophers and political theorists on the issue of global justice. Global justice concerns the search for ethical norms that should govern interactions between people, states, corporations and other agents acting in the global arena, as well as the design of social institutions that link them together. The volume includes articles that engage with major theoretical questions such as the applicability of the ideals of social and economic equality to the (...)
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  5. Relativism, rationalism and the sociology of knowledge.Barry Barnes & David Bloor - 1982 - In Martin Hollis & Steven Lukes, Rationality and relativism. Cambridge: MIT Press.
  6. Scientific Knowledge: A Sociological Approach.Barry Barnes, David Bloor & John Henry - 1996 - University of Chicago Press.
     
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  7. Geographical Categories: An Ontological Retrospective.Barry Smith & David M. Mark - 2001 - International Journal of Geographical Information Science 15 (7):507–512.
    Since it is only five years since the publication of our paper, "Geographical categories: An ontological investigation" (Smith and Mark 2001), it seems somewhat strange to be making retrospective comments on the piece. Nevertheless, the field is moving quickly, and much has happened since the article appeared. A large number of papers have already cited the work, which suggests that there is a seam here that people find worthy of being mined. In this short essay, we first review the paper (...)
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  8. The interaction of science and technology.Barry Barnes & David Edge - 1982 - In Barry Barnes & David O. Edge, Science in context: readings in the sociology of science. Cambridge: MIT Press. pp. 147--154.
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  9.  33
    The Light vs. Dark Triad of Personality: Contrasting Two Very Different Profiles of Human Nature.Scott Barry Kaufman, David Bryce Yaden, Elizabeth Hyde & Eli Tsukayama - 2019 - Frontiers in Psychology 10.
    While there is a growing literature on “dark traits” (i.e., socially aversive traits), there has been a lack of integration with the burgeoning research literature on positive traits and fulfilling and growth-oriented outcomes in life. To help move the field toward greater integration, we contrasted the nomological network of the Dark Triad (a well-studied cluster of socially aversive traits) with the nomological network of the Light Triad, measured by the 12-item Light Triad Scale (LTS). The LTS is a first draft (...)
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  10. Science in context: readings in the sociology of science.Barry Barnes & David O. Edge (eds.) - 1982 - Cambridge: MIT Press.
    This collection of eighteen readings provides a basic text for undergraduates taking sociology of science courses. A general survey of articles published between 1961 and 1981, the book is also a useful overview for students taking courses in social and political studies of science; science, technology, and society; and "social issues" components of courses in the environmental sciences, geography, philosophy, and history of science. The editors have organized the book around "the relationship between the subculture of science and the wider (...)
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  11. The organization of academic science: communication and control.Barry Barnes & David Edge - 1982 - In Barry Barnes & David O. Edge, Science in context: readings in the sociology of science. Cambridge: MIT Press. pp. 13--20.
     
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  12. Logic, Form and Matter.Barry Smith & David Murray - 1981 - Aristotelian Society Supplementary Volume 55 (1):47 - 74.
    It is argued, on the basis of ideas derived from Wittgenstein's Tractatus and Husserl's Logical Investigations, that the formal comprehends more than the logical. More specifically: that there exist certain formal-ontological constants (part, whole, overlapping, etc.) which do not fall within the province of logic. A two-dimensional directly depicting language is developed for the representation of the constants of formal ontology, and means are provided for the extension of this language to enable the representation of certain materially necessary relations. The (...)
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  13. Introduction.Barry Smith & David Woodruff Smith - 1995 - In Barry Smith & David Woodruff Smith, The Cambridge companion to Husserl. New York: Cambridge University Press.
    Husserl’s philosophy, by the usual account, evolved through three stages: 1. development of an anti-psychologistic, objective foundation of logic and mathematics, rooted in Brentanian descriptive psychology; 2. development of a new discipline of "phenomenology" founded on a metaphysical position dubbed "transcendental idealism"; transformation of phenomenology from a form of methodological solipsism into a phenomenology of intersubjectivity and ultimately (in his Crisis of 1936) into an ontology of the life-world, embracing the social worlds of culture and history. We show that this (...)
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  14. Scientific Knowledge. A Sociological Analysis.Barry Barnes, David Bloor & John Henry - 1999 - Journal for General Philosophy of Science / Zeitschrift für Allgemeine Wissenschaftstheorie 30 (1):173-176.
     
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  15. Ontology and Geographic Kinds.Barry Smith & David M. Mark - 1999 - In T. Poiker & N. Chrisman, Proceedings of the 8th International Symposium on Spatial Data Handling. pp. 308-320.
    Cognitive categories in the geographic realm appear to manifest certain special features as contrasted with categories for objects at surveyable scales. We have argued that these features reflect specific ontological characteristics of geographic objects. This paper presents hypotheses as to the nature of the features mentioned, reviews previous empirical work on geographic categories, and presents the results of pilot experiments that used English-speaking subjects to test our hypotheses. Our experiments show geographic categories to be similar to their non-geographic counterparts in (...)
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  16. Do mountains exist? Towards an ontology of landforms.Barry Smith & David Mark - 2003 - Environment and Planning B (Planning and Design) 30 (3):411–427.
    Do mountains exist? The answer to this question is surely: yes. In fact, ‘mountain’ is the example of a kind of geographic feature or thing most commonly cited by English speakers (Mark, et al., 1999; Smith and Mark 2001), and this result may hold across many languages and cultures. But whether they are considered as individuals (tokens) or as kinds (types), mountains do not exist in quite the same unequivocal sense as do such prototypical everyday objects as chairs or people.
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  17. Ontology with Human Subjects Testing: An Empirical Investigation of Geographic Categories.Barry Smith & David M. Mark - 1998 - American Journal of Economics and Sociology 58 (2):245–272.
    Ontology, since Aristotle, has been conceived as a sort of highly general physics, a science of the types of entities in reality, of the objects, properties, categories and relations which make up the world. At the same time ontology has been for some two thousand years a speculative enterprise. It has rested methodologically on introspection and on the construction and analysis of elaborate world-models and of abstract formal-ontological theories. In the work of Quine and others this ontological theorizing in abstract (...)
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  18. Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base.Jiye Ai, Barry Smith & David Wong - 2010 - BMC Bioinformatics 11 (1):302.
    The Salivaomics Knowledge Base (SKB) is designed to serve as a computational infrastructure that can permit global exploration and utilization of data and information relevant to salivaomics. SKB is created by aligning (1) the saliva biomarker discovery and validation resources at UCLA with (2) the ontology resources developed by the OBO (Open Biomedical Ontologies) Foundry, including a new Saliva Ontology (SALO). We define the Saliva Ontology (SALO; http://www.skb.ucla.edu/SALO/) as a consensus-based controlled vocabulary of terms and relations dedicated to the salivaomics (...)
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  19. The Mystery of Capital and the Construction of Social Reality.Barry Smith, David M. Mark & Isaac Ehrlich (eds.) - 2008 - Open Court.
    John Searle’s The Construction of Social Reality and Hernando de Soto’s The Mystery of Capital shifted the focus of current thought on capital and economic development to the cultural and conceptual ideas that underpin market economies and that are taken for granted in developed nations. This collection of essays assembles 21 philosophers, economists, and political scientists to help readers understand these exciting new theories.
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  20.  40
    Two comments on Lemmon's Beginning logic.Barry Coburn & David Miller - 1977 - Notre Dame Journal of Formal Logic 18 (4):607-610.
  21. Applied Ontology: A Marvin Farber Conference on Law and Institutions in Society.Barry Smith & David R. Koepsell (eds.) - 1998 - Buffalo: University at Buffalo.
    The application of ontology has thus far [in 1998] been confined almost exclusively to the field of knowledge representation. Ontology has been applied, for example, in the design of medical databases and in the construction of geographical information systems. One area which is naturally suited to ontological analysis is that of the law and of social institutions in general. -/- Legal systems are composed of legal entities, such as laws, contracts, obligations, and rights. Their application yields new categories of entities (...)
     
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  22. Scientific Knowledge: A Sociological Approach and Steven Shapin, The Scientific Revolution.James Robert Brown, Barry Barnes, David Bloor & John Henry - 1998 - International Studies in the Philosophy of Science 12 (1):100.
  23. Science as expertise.Barry Barnes & David Edge - 1982 - In Barry Barnes & David O. Edge, Science in context: readings in the sociology of science. Cambridge: MIT Press. pp. 233--249.
     
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  24.  23
    Book notes. [REVIEW]Barry Fagin & David Clarke - 2002 - Knowledge, Technology & Policy 15 (3):100-102.
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    Comments on "Absolute judgment and paired-associate learning: Kissing cousins or identical twins?" by J. A. Siegel and W. Siegel. [REVIEW]Barry Leshowitz & David M. Green - 1974 - Psychological Review 81 (2):177-179.
  26. Bioinformatics advances in saliva diagnostics.Ji-Ye Ai, Barry Smith & David T. W. Wong - 2012 - International Journal of Oral Science 4 (2):85--87.
    There is a need recognized by the National Institute of Dental & Craniofacial Research and the National Cancer Institute to advance basic, translational and clinical saliva research. The goal of the Salivaomics Knowledge Base (SKB) is to create a data management system and web resource constructed to support human salivaomics research. To maximize the utility of the SKB for retrieval, integration and analysis of data, we have developed the Saliva Ontology and SDxMart. This article reviews the informatics advances in saliva (...)
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  27. Ontology-based knowledge representation of experiment metadata in biological data mining.Scheuermann Richard, Kong Megan, Dahlke Carl, Cai Jennifer, Lee Jamie, Qian Yu, Squires Burke, Dunn Patrick, Wiser Jeff, Hagler Herb, Herb Hagler, Barry Smith & David Karp - 2009 - In Chen Jake & Lonardi Stefano, Biological Data Mining. Chapman Hall / Taylor and Francis. pp. 529-559.
    According to the PubMed resource from the U.S. National Library of Medicine, over 750,000 scientific articles have been published in the ~5000 biomedical journals worldwide in the year 2007 alone. The vast majority of these publications include results from hypothesis-driven experimentation in overlapping biomedical research domains. Unfortunately, the sheer volume of information being generated by the biomedical research enterprise has made it virtually impossible for investigators to stay aware of the latest findings in their domain of interest, let alone to (...)
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  28. Relations in Biomedical Ontologies.Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kuma, Jane Lomax, Chris Mungall, , Fabian Neuhaus, Alan Rector & Cornelius Rosse - 2005 - Genome Biology 6 (5):R46.
    To enhance the treatment of relations in biomedical ontologies we advance a methodology for providing consistent and unambiguous formal definitions of the relational expressions used in such ontologies in a way designed to assist developers and users in avoiding errors in coding and annotation. The resulting Relation Ontology can promote interoperability of ontologies and support new types of automated reasoning about the spatial and temporal dimensions of biological and medical phenomena.
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  29. Implementing Dempster-Shafer Theory for property similarity in Conceptual Spaces modeling.Jeremy R. Chapman, John L. Crassidis, James Llinas, Barry Smith & David Kasmier - 2022 - Sensor Systems and Information Systems IV, American Institute of Aeronautics and Astronautics (AIAA) SCITECH Forum 2022.
    Previous work has shown that the Complex Conceptual Spaces − Single Observation Mathematical framework is a useful tool for event characterization. This mathematical framework is developed on the basis of Conceptual Spaces and uses integer linear programming to find the needed similarity values. The work of this paper is focused primarily on space event characterization. In particular, the focus is on the ranking of threats for malicious space events such as a kinetic kill. To make the Conceptual Spaces framework work, (...)
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  30. The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration.Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J. Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Nigam Shah, Patricia L. Whetzel & Suzanna Lewis - 2007 - Nature Biotechnology 25 (11):1251-1255.
    The value of any kind of data is greatly enhanced when it exists in a form that allows it to be integrated with other data. One approach to integration is through the annotation of multiple bodies of data using common controlled vocabularies or ‘ontologies’. Unfortunately, the very success of this approach has led to a proliferation of ontologies which itself creates obstacles to integration. The Open Biomedical Ontologies (OBO) consortium has set in train a strategy to overcome this problem. Existing (...)
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  31. Interpreting the many-worlds interpretation.David Albert & Barry Loewer - 1988 - Synthese 77 (November):195-213.
  32. More about ontology: Response.Barry Smith, Louis Goldberg, Michael Glick & Alan Ruttenberg - 2011 - Journal of the American Dental Association 142 (3):252-254.
    Letter commenting on the paper Barry Smith, Louis J. Goldberg, Alan Ruttenberg & Michael Glick, "Ontology and the Future of Dental Research Informatics", Journal of the American Dental Association 141 2010;(10):1173-75 with responses by the authors of the paper.
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  33. Ontology and the Future of Dental Research Informatics.Barry Smith, Louis J. Goldberg, Alan Ruttenberg & Michael Glick - 2010 - Journal of the American Dental Association 141 (10):1173-75.
    How do we find what is clinically significant in the swarms of data being generated by today’s diagnostic technologies? As electronic records become ever more prevalent – and digital imaging and genomic, proteomic, salivaomics, metabalomics, pharmacogenomics, phenomics and transcriptomics techniques become commonplace – fdifferent clinical and biological disciplines are facing up to the need to put their data houses in order to avoid the consequences of an uncontrolled explosion of different ways of describing information. We describe a new strategy to (...)
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  34. A retrospective account of the development and evaluation processes of a science curriculum project.Barry J. Fraser & David Cohen - 1989 - Science Education 73 (1):25-44.
     
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  35.  33
    Features, objects, and other things: Ontological distinctions in the geographic domain.David M. Mark, Andre Skupin & Barry Smith - 2001 - In Daniel R. Montello, Spatial Information Theory: Foundations of Geographic Information Science. New York: Springer.
    Two hundred and sixty-three subjects each gave examples for one of five geographic categories: geographic features, geographic objects, geographic concepts, something geographic, and something that could be portrayed on a map. The frequencies of various responses were significantly different, indicating that the basic ontological terms feature, object, etc., are not interchangeable but carry different meanings when combined with adjectives indicating geographic or mappable. For all of the test phrases involving geographic, responses were predominantly natural features such as mountain, river, lake, (...)
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  36.  43
    An evaluation of educational outreach to improve evidence‐based prescribing in Medicaid: a cautionary tale.Alan J. Zillich, Ronald T. Ackermann, Timothy E. Stump, Roberta J. Ambuehl, Steven M. Downs, Ann M. Holmes, Barry Katz & Thomas S. Inui - 2008 - Journal of Evaluation in Clinical Practice 14 (5):854-860.
  37. Benefiting from Wrongdoing and Sustaining Wrongful Harm.Christian Barry & David Wiens - 2016 - Journal of Moral Philosophy 13 (5):530-552.
    Some moral theorists argue that innocent beneficiaries of wrongdoing may have special remedial duties to address the hardships suffered by the victims of the wrongdoing. These arguments generally aim to simply motivate the idea that being a beneficiary can provide an independent ground for charging agents with remedial duties to the victims of wrongdoing. Consequently, they have neglected contexts in which it is implausible to charge beneficiaries with remedial duties to the victims of wrongdoing, thereby failing to explore the limits (...)
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  38. Warranted Diagnosis.David Limbaugh, David Kasmier, Werner Ceusters & Barry Smith - 2019 - In David Limbaugh, David Kasmier, Werner Ceusters & Barry Smith, Proceedings of the International Conference on Biomedical Ontology (ICBO), Buffalo, NY. Buffalo: pp. 1-10.
    A diagnostic process is an investigative process that takes a clinical picture as input and outputs a diagnosis. We propose a method for distinguishing diagnoses that are warranted from those that are not, based on the cognitive processes of which they are the outputs. Processes designed and vetted to reliably produce correct diagnoses will output what we shall call ‘warranted diagnoses’. The latter are diagnoses that should be trusted even if they later turn out to have been wrong. Our work (...)
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  39. Ontology and Cognitive Outcomes.David Limbaugh, Jobst Landgrebe, David Kasmier, Ronald Rudnicki, James Llinas & Barry Smith - 2020 - Journal of Knowledge Structures and Systems 1 (1): 3-22.
    The term ‘intelligence’ as used in this paper refers to items of knowledge collected for the sake of assessing and maintaining national security. The intelligence community (IC) of the United States (US) is a community of organizations that collaborate in collecting and processing intelligence for the US. The IC relies on human-machine-based analytic strategies that 1) access and integrate vast amounts of information from disparate sources, 2) continuously process this information, so that, 3) a maximally comprehensive understanding of world actors (...)
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  40. Proceedings of the International Conference on Biomedical Ontology (ICBO), Buffalo, NY.David Limbaugh, David Kasmier, Werner Ceusters & Barry Smith (eds.) - 2019 - Buffalo:
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  41. Foundation for a Realist Ontology of Cognitive Processes.David Kasmier, David Limbaugh & Barry Smith - 2019 - In David Kasmier, David Limbaugh & Barry Smith, Proceedings of the International Conference on Biomedical Ontology (ICBO), University at Buffalo, NY.
    What follows is a first step towards an ontology of conscious mental processes. We provide a theoretical foundation and characterization of conscious mental processes based on a realist theory of intentionality and using BFO as our top-level ontology. We distinguish three components of intentional mental process: character, directedness, and objective referent, and describe several features of the process character and directedness significant to defining and classifying mental processes. We arrive at the definition of representational mental process as a process that (...)
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  42. Guidelines for writing definitions in ontologies.Selja Seppälä, Alan Ruttenberg & Barry Smith - 2017 - Ciência da Informação 46 (1): 73-88.
    Ontologies are being used increasingly to promote the reusability of scientific information by allowing heterogeneous data to be integrated under a common, normalized representation. Definitions play a central role in the use of ontologies both by humans and by computers. Textual definitions allow ontologists and data curators to understand the intended meaning of ontology terms and to use these terms in a consistent fashion across contexts. Logical definitions allow machines to check the integrity of ontologies and reason over data annotated (...)
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  43. Geographic Information Science and Mountain Geomorphology.David M. Mark & Barry Smith (eds.) - 2004 - Chichester, England: Springer-Praxis.
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  44.  32
    Evidence that chemical signals promote fighting between intact male hooded rats.Barry Fass, J. Russell Mason & David A. Stevens - 1981 - Bulletin of the Psychonomic Society 17 (3):156-158.
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    The Cambridge companion to Husserl.Barry Smith & David Woodruff Smith (eds.) - 1995 - New York: Cambridge University Press.
    The essays in this volume explore the full range of Husserl's work and reveal just how systematic his philosophy is. There are treatments of his most important contributions to phenomenology, intentionality and the philosophy of mind, epistemology, the philosophy of language, ontology, and mathematics. An underlying theme of the volume is a resistance to the idea, current in much intellectual history, of a radical break between 'modern' and 'postmodern' philosophy, with Husserl as the last of the great Cartesians. Husserl is (...)
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  46. Ontology and geographic objects: An empirical study of cognitive categorization.David M. Mark, Barry Smith & Barbara Tversky - 1999 - In Freksa C. & Mark David M., Spatial Information Theory. Cognitive and Computational Foundations of Geographic Information Science (Lecture Notes in Computer Science 1661). pp. 283-298.
    Cognitive categories in the geographic realm appear to manifest certain special features as contrasted with categories for objects at surveyable scales. We have argued that these features reflect specific ontological characteristics of geographic objects. This paper presents hypotheses as to the nature of the features mentioned, reviews previous empirical work on geographic categories, and presents the results of pilot experiments that used English-speaking subjects to test our hypotheses. Our experiments show geographic categories to be similar to their non-geographic counterparts in (...)
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  47. Ontological Foundations for Geographic Information Science.David Mark, Barry Smith, Max Egenhofer & Stephen Hirtle - 2004 - In McMaster Robert & Usery E. Lynn, A Research Agenda for Geographic Information Science. CRC Press. pp. 335-350.
    We propose as a UCGIS research priority the topic of “Ontological Foundations for Geographic Information.” Under this umbrella we unify several interrelated research subfields, each of which deals with different perspectives on geospatial ontologies and their roles in geographic information science. While each of these subfields could be addressed separately, we believe it is important to address ontological research in a unitary, systematic fashion, embracing conceptual issues concerning what would be required to establish an exhaustive ontology of the geospatial domain, (...)
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  48. The measurement problem: Some “solutions”.David Z. Albert & Barry Loewer - 1991 - Synthese 86 (1):87 - 98.
  49. Definitions in ontologies.Selja Seppälä, Alan Ruttenberg, Yonatan Schreiber & Barry Smith - 2016 - Cahiers de Lexicologie 109 (2):175‐207.
    Definitions vary according to context of use and target audience. They must be made relevant for each context to fulfill their cognitive and linguistic goals. This involves adapting their logical structure, type of content, and form to each context of use. We examine from these perspectives the case of definitions in ontologies.
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  50. Ontology of plays for autonomous teaming and collaboration.David Kasmier, Eric Merrell, Robert Kelly, Barry Smith, Curtis Heisey, Donald Evan Maki, Marc Brittain, Ronald Ankner & Kevin Bush - 2021 - Proceedings of the 14Th Seminar on Ontology Research in Brazil (Ontobras 2021), Ceur 3050, 9-22.
    We propose a domain-level ontology of plays for the facilitation of play-based collaborative autonomy among unmanned and manned-unmanned aircraft teams in the Army’s Unmanned Aircraft System (UAS) mission domain. We define a play as a type of plan that prescribes some pattern of intentional acts that are intended to reliably result in some goal in some competitive context, and which specifies one or more roles that are realized by those prescribed intentional acts. The ontology is well suited to be extended (...)
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